SeekSpace® Tools

SeekSpace® Tools is a software developed by SEEKGENE for processing single-cell spatial transcriptomics data. It extends the functionality of SeekSoul® Tools module for single-cell transcriptomic analysis, which includes barcode quantification, cell calling, and obtain a feature-barcode matrix that can be used for downstream analysis. For spatial libraries, SeekSpace® Tools can precisely locate cells on the chip by correlated spatial barcodes. It also able to segment tissue from background of slide image, conduct downstream clustering and differential analysis on successfully located cells, and allow spatial visualisation of cells.

• Download
• Installation Guide
• Tutorials
  • Data preparation
  • Run SeekSpace® Tools
  • Output descriptions
  • Algorithms Overview